BRS reactor setup

I have two BRS reactors that I haven't plumbed yet. One for carbon and the other for GFO. I was thinking about running a single MJ 1200 to a Y, adjust the ball valve to just tumble the GFO, and let the carbon reactor run full boogie. Does this setup require a lot of flow adjustment given the reactors are in parallel instead of series like the dual reactor? I'm trying to avoid multiple pumps and noise.
 
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