I'll chime in but I'm not an expert, by far, so take it or leave it.
Personally, I prefer fresh cuts and I have a very high success rate with them. There are less changes of critters since there's no plug or rock to collect them or their eggs.
Even the pros lose their existing colonies to RTN and they never really know why. Cherry Corals lost their awesome Heaven and Hell milli and there are a tons of examples just like that. If you don't see any more RTN'ing and you don't see any weird creatures, I'd just chalk it up to something strange happened and move on.
As far as dipping in iodine for hours; I don't dip in iodine but I would imagine dipping in anything that long wouldn't be too good. I always dip and when I do, I use Bayer at a a concentration of 10 ml/cup of tank water for 15 minutes. (That almost sounds like the Most Interesting Man in the World commercial.)